The following are alignments of various groups of organisms that have been constructed using the Mauve genome alignment system. You may download these alignments and view them using the Mauve Java viewer. To download, right click the alignment link and select 'Save' from the popup menu [Mac users should control+click]. Also download all source sequences to the same folder as the alignment. Then open the saved alignment file from within the Mauve viewer application. Note that the alignments may take several minutes to load in the viewer. Be patient.

E. coli K12 MG1655, E. coli O157:H7 RIMD, and S. enterica typhimurium DT104 mauve alignment
Constructed from source sequences: k12_mg1655_m56.gbk, O157_RIMD.gbk, and S_Typhimurium_DT104.dbs

S. cerevisiae and S. bayanus mauve alignment
Constructed from source sequences: S_cerevisiae.gbk and S_bayanus.fasta

S. cerevisiae, S. bayanus, and S. miktae mauve alignment
Constructed from source sequences: S_cerevisiae.gbk, S_bayanus.fasta, and S_miktae.fasta

S. cerevisiae, S. bayanus, S. miktae, and S. paradoxus mauve alignment
Constructed from source sequences: S_cerevisiae.gbk, S_bayanus.fasta, S_miktae.fasta
and S_paradoxus.fasta

Mauve alignment of 12 poxvirii: twelve_poxvirus.alignment
Constructed from source sequences: pox_subset.fas

These alignments need a machine with ample memory (> 1GB) to view with the Mauve viewer. The -Xmx flag sets the max memory available for the java virtual machine. If an OutOfMemoryException occurs, set -Xmx to a larger value. Of course, the text format alignments can be used without the viewer.

D. melanogaster and D. yakuba mauve alignment
Constructed from source sequences: dmel.gbk and dyak.fasta

D. ananassae, D. melanogaster, and D. yakuba mauve alignment
Constructed from source sequences: dana.fasta, dmel.gbk and dyak.fasta

D. ananassae, D. melanogaster, D. pseudoobscura, and D. yakuba mauve alignment
Constructed from source sequences: dana.fasta, dmel.gbk, dpse.fasta, and dyak.fasta

D. ananassae, D. melanogaster, D. mojavensis, D. pseudoobscura, D. virilis, and D. yakuba mauve alignment
Constructed from source sequences: dana.fasta, dmel.gbk, dmoj.fasta, dpse.fasta, dvir.fasta, and dyak.fasta

D. melanogaster and D. pseudoobscura mauve alignment
Constructed from source sequences: dmel.gbk and dpse.fasta