aligned_coords_s Struct Reference

store a pair of aligned positions and the characters More...

List of all members.

Public Attributes

char char1
char char2
int64 pos1
int64 pos2


Detailed Description

store a pair of aligned positions and the characters

Definition at line 33 of file scoreAlignment2.cpp.


Member Data Documentation

char aligned_coords_s::char1
 

Definition at line 36 of file scoreAlignment2.cpp.

Referenced by constructCoordList(), and sanityCheck().

char aligned_coords_s::char2
 

Definition at line 37 of file scoreAlignment2.cpp.

Referenced by constructCoordList(), and sanityCheck().

int64 aligned_coords_s::pos1
 

Definition at line 34 of file scoreAlignment2.cpp.

Referenced by checkCollinear(), computeLCBaccuracy(), constructCoordList(), markAllCorrectlyAlignedLcbs(), AlignedCoordSeqIComparator::operator()(), printIndel(), and sanityCheck().

int64 aligned_coords_s::pos2
 

Definition at line 35 of file scoreAlignment2.cpp.

Referenced by checkCollinear(), computeLCBaccuracy(), constructCoordList(), AlignedCoordSeqIComparator::operator()(), printIndel(), and sanityCheck().


The documentation for this struct was generated from the following file:
Generated on Mon Aug 19 06:00:53 2013 for sgEvolver by doxygen 1.3.6