AluRecord Class Reference

List of all members.

Public Member Functions
	AluRecord ()
gnSeqI	length (void)
Public Attributes
float	deleted
float	divergent
gnSeqI	end
gnSeqI	endDB
float	inserted
gnSeqI	prior
string	queryId
gnSeqI	remaining
string	repeatClass
string	repeatId
int	score
gnSeqI	start
gnSeqI	startDB
string	strand

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Constructor & Destructor Documentation

AluRecord::AluRecord (   )

Definition at line 73 of file scoreALU.cpp. References deleted, divergent, end, endDB, inserted, prior, queryId, remaining, repeatClass, repeatId, score, start, startDB, and strand.

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Member Function Documentation

gnSeqI AluRecord::length (  void   )

Definition at line 67 of file scoreALU.cpp. References end, and start. Referenced by ReadAluFile().

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Member Data Documentation

float AluRecord::deleted

Definition at line 39 of file scoreALU.cpp. Referenced by AluRecord(), and ReadAluFile().

float AluRecord::divergent

Definition at line 37 of file scoreALU.cpp. Referenced by AluRecord(), and ReadAluFile().

gnSeqI AluRecord::end

Definition at line 47 of file scoreALU.cpp. Referenced by AluRecord(), length(), and ReadAluFile().

gnSeqI AluRecord::endDB

Definition at line 63 of file scoreALU.cpp. Referenced by AluRecord().

float AluRecord::inserted

Definition at line 41 of file scoreALU.cpp. Referenced by AluRecord(), and ReadAluFile().

gnSeqI AluRecord::prior

Definition at line 59 of file scoreALU.cpp. Referenced by AluRecord().

string AluRecord::queryId

Definition at line 43 of file scoreALU.cpp. Referenced by AluRecord(), and ReadAluFile().

gnSeqI AluRecord::remaining

Definition at line 49 of file scoreALU.cpp. Referenced by AluRecord(), and ReadAluFile().

string AluRecord::repeatClass

Definition at line 55 of file scoreALU.cpp. Referenced by AluRecord(), and ReadAluFile().

string AluRecord::repeatId

Definition at line 53 of file scoreALU.cpp. Referenced by AluRecord(), and ReadAluFile().

int AluRecord::score

Definition at line 35 of file scoreALU.cpp. Referenced by AluRecord(), and ReadAluFile().

gnSeqI AluRecord::start

Definition at line 45 of file scoreALU.cpp. Referenced by AluRecord(), length(), and ReadAluFile().

gnSeqI AluRecord::startDB

Definition at line 61 of file scoreALU.cpp. Referenced by AluRecord().

string AluRecord::strand

Definition at line 51 of file scoreALU.cpp. Referenced by AluRecord(), and ReadAluFile().

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The documentation for this class was generated from the following file:

• src/scoreALU.cpp

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