AluRecord Class Reference

List of all members.

Public Member Functions

 AluRecord ()
gnSeqI length (void)

Public Attributes

float deleted
float divergent
gnSeqI end
gnSeqI endDB
float inserted
gnSeqI prior
string queryId
gnSeqI remaining
string repeatClass
string repeatId
int score
gnSeqI start
gnSeqI startDB
string strand

Constructor & Destructor Documentation

AluRecord::AluRecord  ) 
 

Definition at line 73 of file scoreALU.cpp.

References deleted, divergent, end, endDB, inserted, prior, queryId, remaining, repeatClass, repeatId, score, start, startDB, and strand.


Member Function Documentation

gnSeqI AluRecord::length void   ) 
 

Definition at line 67 of file scoreALU.cpp.

References end, and start.

Referenced by ReadAluFile().


Member Data Documentation

float AluRecord::deleted
 

Definition at line 39 of file scoreALU.cpp.

Referenced by AluRecord(), and ReadAluFile().

float AluRecord::divergent
 

Definition at line 37 of file scoreALU.cpp.

Referenced by AluRecord(), and ReadAluFile().

gnSeqI AluRecord::end
 

Definition at line 47 of file scoreALU.cpp.

Referenced by AluRecord(), length(), and ReadAluFile().

gnSeqI AluRecord::endDB
 

Definition at line 63 of file scoreALU.cpp.

Referenced by AluRecord().

float AluRecord::inserted
 

Definition at line 41 of file scoreALU.cpp.

Referenced by AluRecord(), and ReadAluFile().

gnSeqI AluRecord::prior
 

Definition at line 59 of file scoreALU.cpp.

Referenced by AluRecord().

string AluRecord::queryId
 

Definition at line 43 of file scoreALU.cpp.

Referenced by AluRecord(), and ReadAluFile().

gnSeqI AluRecord::remaining
 

Definition at line 49 of file scoreALU.cpp.

Referenced by AluRecord(), and ReadAluFile().

string AluRecord::repeatClass
 

Definition at line 55 of file scoreALU.cpp.

Referenced by AluRecord(), and ReadAluFile().

string AluRecord::repeatId
 

Definition at line 53 of file scoreALU.cpp.

Referenced by AluRecord(), and ReadAluFile().

int AluRecord::score
 

Definition at line 35 of file scoreALU.cpp.

Referenced by AluRecord(), and ReadAluFile().

gnSeqI AluRecord::start
 

Definition at line 45 of file scoreALU.cpp.

Referenced by AluRecord(), length(), and ReadAluFile().

gnSeqI AluRecord::startDB
 

Definition at line 61 of file scoreALU.cpp.

Referenced by AluRecord().

string AluRecord::strand
 

Definition at line 51 of file scoreALU.cpp.

Referenced by AluRecord(), and ReadAluFile().


The documentation for this class was generated from the following file:
Generated on Mon Aug 19 06:00:44 2013 for mauveAligner by doxygen 1.3.6