mauveAligner Class List

Here are the classes, structs, unions and interfaces with brief descriptions:
aligned_coords_sStore a pair of aligned positions and the characters
AlignedCoordSeqIComparator
AluRecord
AnalRowComp
BbSeqComp
BbSorter
CompactMatchRecord
CompactUngappedMatchRecordAn ungapped alignment that also stores a match record
GappedMatchRecordThe gapped match record class
IntervalCompare
IntervalMap
IntervalSeqManipulator
IsNullPtr< T >
livComp
LocComp
MatchLinkStores a link between a subset and a superset match
MatchRecord
MatchSortEntryCompare
MauveOption
MLDeleter
NeighborhoodGroupCompare
NeighborhoodGroupComponentCompare
NeighborhoodListComparatorUsed to sort the neighborhood list using std::sort
NeighborhoodListEntryThis class stores a single entry in the neighborhood list
NllBuffersTemporary buffers that get used every time a neighborhood list lookup is performed
OptionList
PairFirstComparator< PairType >
ProcrastinationQueueA class to prioritize match records for extension based on their multiplicity
ProcrastinationQueue::MultiplicityHeapCompareDefines a multiplicity heap ordering
SeedMatchEnumeratorTurns every seed match into a full match without extension
ShorterThan
TaxonNamePairComparator
TheRealMemHash
ToUPPER
TreeIntervalMap
UngappedMatchRecordAn ungapped alignment that also stores a match record
UniqueMatchFinderFinds all pairwise matches with unique seeds among a group of sequences
VectorIntervalMap

Generated on Mon Aug 19 06:00:44 2013 for mauveAligner by doxygen 1.3.6