org::gel::mauve::tree::Key Interface Reference

Key specifies the interface allowed for intervals that can be stored in an interval sequence tree. More...

Inheritance diagram for org::gel::mauve::tree::Key:

[legend]List of all members.

Public Member Functions
Object	copy ()
void	cropEnd (long size)
void	cropStart (long size)
long	getLength ()
long	getSeqLength ()

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Detailed Description

Key specifies the interface allowed for intervals that can be stored in an interval sequence tree.

Definition at line 7 of file Key.java.

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Member Function Documentation

Object org::gel::mauve::tree::Key::copy (   )

Implemented in org::gel::mauve::tree::FileKey, and org::gel::mauve::tree::GapKey. Referenced by org::gel::mauve::tree::IntervalSequenceTree::erase(), org::gel::mauve::tree::IntervalSequenceTree::insert(), and org::gel::mauve::tree::GISTree::insert().

void org::gel::mauve::tree::Key::cropEnd (  long  size  )

Implemented in org::gel::mauve::tree::FileKey, and org::gel::mauve::tree::GapKey. Referenced by org::gel::mauve::tree::IntervalSequenceTree::erase(), org::gel::mauve::tree::IntervalSequenceTree::insert(), and org::gel::mauve::tree::GISTree::insert().

void org::gel::mauve::tree::Key::cropStart (  long  size  )

Implemented in org::gel::mauve::tree::FileKey, and org::gel::mauve::tree::GapKey. Referenced by org::gel::mauve::tree::IntervalSequenceTree::erase(), org::gel::mauve::tree::IntervalSequenceTree::insert(), and org::gel::mauve::tree::GISTree::insert().

long org::gel::mauve::tree::Key::getLength (   )

Implemented in org::gel::mauve::tree::FileKey, and org::gel::mauve::tree::GapKey. Referenced by org::gel::mauve::tree::IntervalSequenceTree::insert(), org::gel::mauve::tree::GISTree::insert(), org::gel::mauve::tree::GISTree::recalculateLengths(), and org::gel::mauve::tree::GISTree::recursiveFind().

long org::gel::mauve::tree::Key::getSeqLength (   )

Implemented in org::gel::mauve::tree::FileKey, and org::gel::mauve::tree::GapKey. Referenced by org::gel::mauve::tree::GISTree::columnToSeqPos(), org::gel::mauve::tree::GISTree::insert(), org::gel::mauve::tree::GISTree::recalculateLengths(), and org::gel::mauve::tree::GISTree::recursiveSeqFind().

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The documentation for this interface was generated from the following file:

• src/org/gel/mauve/tree/Key.java

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