org::gel::mauve::DbXrefHandler Interface Reference

An interface classes that map a GenBank db_xref to a web database URL. More...

Inheritance diagram for org::gel::mauve::DbXrefHandler:

Inheritance graph
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List of all members.

Public Member Functions

String getDbId ()
 Returns the name of the database as it appears in GenBank db_xref entries.

String getName ()
 Returns the english name of the database.

String getURL (String feature_id)
 Constructs a URL for the given feature ID.


Detailed Description

An interface classes that map a GenBank db_xref to a web database URL.

Author:
koadman

Definition at line 12 of file DbXrefHandler.java.


Member Function Documentation

String org::gel::mauve::DbXrefHandler::getDbId  ) 
 

Returns the name of the database as it appears in GenBank db_xref entries.

Implemented in org::gel::mauve::AsapXrefHandler, org::gel::mauve::EricXrefHandler, and org::gel::mauve::GiXrefHandler.

Referenced by org::gel::mauve::DbXrefFactory::addHandler(), and org::gel::mauve::DbXrefFactory::DbXrefFactory().

String org::gel::mauve::DbXrefHandler::getName  ) 
 

Returns the english name of the database.

Implemented in org::gel::mauve::AsapXrefHandler, org::gel::mauve::EricXrefHandler, and org::gel::mauve::GiXrefHandler.

Referenced by org::gel::mauve::DbXrefFactory::getDbName().

String org::gel::mauve::DbXrefHandler::getURL String  feature_id  ) 
 

Constructs a URL for the given feature ID.

Implemented in org::gel::mauve::AsapXrefHandler, org::gel::mauve::EricXrefHandler, and org::gel::mauve::GiXrefHandler.

Referenced by org::gel::mauve::DbXrefFactory::getDbURL().


The documentation for this interface was generated from the following file:
Generated on Mon Aug 19 06:03:45 2013 for Mauve by doxygen 1.3.6