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Mauve Class Hierarchy
Go to the graphical class hierarchy
This inheritance list is sorted roughly, but not completely, alphabetically:
org::gel::mauve::summary::output::AbstractTabbedDataWriter
org::gel::mauve::summary::output::AbstractMatchDataWriter
org::gel::mauve::summary::output::AbstractIslandWriter
org::gel::mauve::summary::output::IslandCoordinateWriter
org::gel::mauve::summary::output::IslandFeatureWriter
org::gel::mauve::summary::output::IslandGeneFeatureWriter
org::gel::mauve::summary::output::TroubleMatchWriter
org::gel::mauve::summary::output::OverviewFileWriter
org::gel::mauve::dcjx::Adjacency
org::gel::mauve::dcjx::AdjacencyGraph
org::gel::mauve::summary::output::AlignedSequenceWriter
org::gel::mauve::gui::AlignmentProcessListener
org::gel::mauve::gui::AlignFrame
org::gel::mauve::gui::MauveAlignFrame
org::gel::mauve::gui::ProgressiveMauveAlignFrame
org::gel::mauve::gui::AnalysisDisplayWindow
org::gel::mauve::gui::AnalysisDisplayWindow::ContentManager
org::gel::mauve::summary::AnalysisModuleFrame
org::gel::mauve::gui::navigation::AnnotationContainsFilter
org::gel::mauve::assembly::AssemblyScorer
org::gel::mauve::backbone::Backbone
org::gel::mauve::summary::output::BackboneCompareFile
org::gel::mauve::backbone::BackboneList
org::gel::mauve::backbone::BackboneList::BbComparator
org::gel::mauve::backbone::BackboneList::BbLeftEndComparator
org::gel::mauve::backbone::BackboneListBuilder
org::gel::mauve::BaseViewerModel
org::gel::mauve::LcbViewerModel
org::gel::mauve::XmfaViewerModel
org::gel::mauve::dcjx::Block
org::gel::mauve::dcjx::BlockEnd
org::gel::mauve::dcjx::Head
org::gel::mauve::dcjx::Tail
org::gel::mauve::analysis::BrokenCDS
org::gel::mauve::BrowserLauncher
org::gel::mauve::analysis::CDSErrorExporter
org::gel::mauve::chado::ChadoDB
org::gel::mauve::chado::ChadoFeatureLoader
org::gel::mauve::chado::ChadoReader
org::gel::mauve::chado::ChadoWriter
org::gel::mauve::contigs::ChangedFastaFormat
org::gel::mauve::contigs::ChangedFeatureWriter
org::gel::mauve::Chromosome
org::gel::mauve::color::ColorMenu
org::gel::mauve::ColorScheme
org::gel::mauve::color::BackboneLcbColor
org::gel::mauve::color::BackboneMultiplicityColor
org::gel::mauve::color::LCBColorScheme
org::gel::mauve::color::MultiplicityColorScheme
org::gel::mauve::color::MultiplicityTypeColorScheme
org::gel::mauve::color::NormalizedMultiplicityTypeColorScheme
org::gel::mauve::color::NormalizedOffsetColorScheme
org::gel::mauve::color::OffsetColorScheme
org::gel::mauve::gui::ConsoleDialog
org::gel::mauve::dcjx::Constants
org::gel::mauve::dcjx::Contig
org::gel::mauve::contigs::ContigFeatureWriter
org::gel::mauve::contigs::ContigGrouper::ContigGroup
org::gel::mauve::contigs::ContigHandler
org::gel::mauve::contigs::DefaultContigHandler
org::gel::mauve::contigs::ContigMauveAlignFrame
org::gel::mauve::contigs::ContigReorderer::ReordererMauveFrame
org::gel::mauve::chado::DBUtils
org::gel::mauve::DbXrefFactory
org::gel::mauve::DbXrefFactory::UnknownDatabaseException
org::gel::mauve::DbXrefHandler
org::gel::mauve::AsapXrefHandler
org::gel::mauve::EricXrefHandler
org::gel::mauve::GiXrefHandler
org::gel::mauve::dcj::DCJ
org::gel::mauve::dcjx::DCJ
org::gel::mauve::dcj::DCJ::SB
org::gel::mauve::dcj::DCJ::Vert
org::gel::mauve::dcjx::DCJDistance
org::gel::mauve::dcjx::DCJDistance::DistanceFunction
org::gel::mauve::dcj::DCJWindow
org::gel::mauve::dcj::DCJWindow::ChangeCards
org::gel::mauve::dcj::DCJWindow::ClearData
org::gel::mauve::dcj::DCJWindow::SubmitData
org::gel::mauve::format::DelegatingSequence
org::gel::mauve::format::RichDelegatingSequence
org::gel::mauve::format::DelegatingSequence::DelegatingSublist
org::gel::mauve::gui::dnd::DnDList
org::gel::mauve::gui::ExportFrame
org::gel::mauve::gui::ExportMenu
org::gel::mauve::dcjx::FastAccessTable
org::gel::mauve::gui::sequence::FeatureFilterer
org::gel::mauve::gui::sequence::FeaturePanel::ClickListener
org::gel::mauve::gui::sequence::FeaturePanel::DbXrefMenuAction
org::gel::mauve::gui::sequence::FeaturePanel::FeatureMenuItemBuilder
org::gel::mauve::gui::sequence::FeaturePanel::DbXrefMenuItemBuilder
org::gel::mauve::gui::sequence::FeaturePanel::GenbankMenuItemBuilder
org::gel::mauve::gui::sequence::FeaturePanel::FeaturePopupMenuBuilder
org::gel::mauve::gui::sequence::FeaturePanel::GenbankMenuAction
org::gel::mauve::gui::sequence::FeaturePanel::ToolTipMotionListener
org::gel::mauve::gui::dnd::FileDrop
org::gel::mauve::gui::dnd::FileDrop::Listener
org::gel::mauve::format::FileFinder
org::gel::mauve::gui::FillLayout
org::gel::mauve::FilterCacheSpec
org::gel::mauve::gui::FrameLoader
org::gel::mauve::analysis::Gap
org::gel::mauve::gui::GenericAction
org::gel::mauve::Genome
org::gel::mauve::GenomeBuilder
org::gel::mauve::gui::GenomeCellRenderer
org::gel::mauve::tree::GISTree
org::gel::air::util::GroupHelpers
org::gel::mauve::HighlightListener
org::gel::mauve::gui::LCBStatusBar
org::gel::mauve::gui::sequence::HighlightPanel
org::gel::mauve::gui::sequence::MatchPanel
org::gel::mauve::gui::sequence::RangeHighlightPanel
org::gel::mauve::remote::WargDisplayCommunicator
org::gel::mauve::gui::HintMessageEvent
org::gel::mauve::gui::HintMessageListener
org::gel::mauve::gui::LCBStatusBar
org::gel::mauve::histogram::HistogramBuilder
org::gel::mauve::histogram::HistogramBuilder::HistogramLine
org::gel::mauve::tree::IntervalSequenceTree
org::gel::air::util::IOUtils
org::gel::mauve::tree::IstIterator
org::gel::mauve::tree::IstNode
org::gel::mauve::tree::Key
org::gel::mauve::tree::FileKey
org::gel::mauve::tree::GapKey
org::gel::mauve::LCB
org::gel::mauve::LcbIdComparator
org::gel::mauve::LCBLeftComparator
org::gel::mauve::LCBlist
org::gel::mauve::contigs::ListSequenceIterator
org::gel::mauve::analysis::LiteWeightFeature
org::gel::mauve::Match
org::gel::mauve::gui::sequence::MatchPanel::MatchPopupMenuBuilder
org::gel::mauve::gui::sequence::MatchPanel::MatchPopupMenuItemBuilder
org::gel::mauve::gui::sequence::MatchPanel::EditLcbMenuItemBuilder
org::gel::mauve::gui::sequence::MatchPanel::MatchDisplayMenuItemBuilder
org::gel::mauve::gui::sequence::MatchPanel::SetReferenceMenuItemBuilder
org::gel::mauve::gui::sequence::MatchPopupMenu
org::gel::mauve::MatchStartComparator
org::gel::air::util::MathUtils
org::gel::mauve::gui::Mauve
org::gel::mauve::gui::Mauve::UpdateCheck
org::gel::mauve::MauveConstants
org::gel::mauve::contigs::ContigGrouper
org::gel::mauve::contigs::ContigInverter
org::gel::mauve::contigs::ContigOrderer
org::gel::mauve::contigs::ContigReorderer
org::gel::mauve::contigs::ContigRenamer
org::gel::mauve::contigs::FeatureFixer
org::gel::mauve::contigs::DefaultContigHandler
org::gel::mauve::contigs::FastAContigChangeWriter
org::gel::mauve::gui::navigation::NavigationPanel
org::gel::mauve::gui::navigation::SearchResultPanel
org::gel::mauve::gui::sequence::FlatFileFeatureConstants
org::gel::mauve::gui::sequence::FlatFileFeatureImporter
org::gel::mauve::gui::sequence::MultiGenomeRectangularBeadRenderer
org::gel::mauve::gui::SequenceNavigator
org::gel::mauve::SeqFeatureData
org::gel::mauve::summary::MauveInterfacer
org::gel::mauve::summary::output::IslandCoordinateWriter
org::gel::mauve::summary::output::IslandFeatureWriter
org::gel::mauve::summary::output::OverviewFileWriter
org::gel::mauve::summary::output::SegmentDataProcessor
org::gel::mauve::summary::output::TroubleMatchWriter
org::gel::mauve::summary::ProcessBackboneFile
org::gel::mauve::remote::MauveDisplayCommunicator
org::gel::mauve::MauveFormatException
org::gel::mauve::gui::MauveFrame::GenericAction
org::gel::mauve::MauveHelperFunctions
org::gel::mauve::remote::MauveInterface
org::gel::mauve::remote::MauveInterfaceImpl
org::gel::mauve::module::MauveModule
org::gel::mauve::module::MauveModuleFrame
org::gel::mauve::gui::MauveRenderingHints
org::gel::mauve::gui::MauveRenderingHints::SimilarityDensityKey
org::gel::mauve::ModelBuilder
org::gel::mauve::ModelEvent
org::gel::mauve::ModelListener
org::gel::mauve::gui::LcbLinePanel
org::gel::mauve::gui::RearrangementPanel
org::gel::mauve::gui::sequence::AbstractSequencePanel
org::gel::mauve::gui::sequence::ControlPanel
org::gel::mauve::gui::sequence::FeaturePanel
org::gel::mauve::gui::sequence::HighlightPanel
org::gel::mauve::gui::sequence::HistogramPanel
org::gel::mauve::gui::sequence::MatchPanel
org::gel::mauve::gui::sequence::RangeHighlightPanel
org::gel::mauve::gui::sequence::RulerPanel
org::gel::mauve::gui::sequence::SeqPanel
org::gel::mauve::gui::sequence::ControlPanel
org::gel::mauve::gui::sequence::RRSequencePanel
org::gel::mauve::ModelProgressListener
org::gel::mauve::gui::MauveFrame
org::gel::mauve::module::ModuleListener
org::gel::mauve::MyConsole
org::gel::mauve::gui::MySymbolSequenceRenderer
org::gel::mauve::analysis::OneToOneOrthologExporter
org::gel::mauve::analysis::OneToOneOrthologExporter::CdsOverlap
org::gel::mauve::analysis::OneToOneOrthologExporter::ExportFrame
org::gel::mauve::analysis::OneToOneOrthologExporter::OrthologExportParameters
org::gel::mauve::analysis::OneToOneOrthologExporter::Quad
org::gel::mauve::OptionsBuilder
org::gel::mauve::gui::OutStreamPrinter
org::gel::mauve::summary::output::PartialFastaWriter
org::gel::mauve::dcjx::Permutation
org::gel::mauve::analysis::PermutationExporter
org::gel::mauve::PreferencesDump
org::gel::mauve::gui::PrintPreviewCanvas
org::gel::mauve::gui::PrintPreviewDialog
org::gel::mauve::gui::PrintUtilities
org::gel::mauve::gui::QualifierPanel
org::gel::mauve::format::RawFastaBridgeFilterReader
org::gel::mauve::gui::RearrangementPanel::CtrlKeyDetector
org::gel::mauve::remote::RemoteApplet
org::gel::mauve::remote::RemoteControl
org::gel::mauve::remote::RemoteControlImpl
org::gel::mauve::format::RichStrandedFeatureTemplate
org::gel::mauve::gaggle::SampleGoose
org::gel::mauve::assembly::ScoreAssembly
org::gel::mauve::gui::navigation::SearchResultPanel::SignedIcon
org::gel::mauve::analysis::Segment
org::gel::mauve::analysis::Segment::GenomePositionComparator
org::gel::mauve::analysis::SegmentComparator
org::gel::mauve::SeqFeatureData::FeatureComparator
org::gel::mauve::format::SequenceIteratorCache
org::gel::mauve::SimilarityIndex
org::gel::mauve::analysis::SNP
org::gel::mauve::analysis::SnpExporter
org::gel::mauve::gui::SplashScreen
org::gel::air::util::StatusBox
org::gel::mauve::gui::StyleMenu
org::gel::mauve::SupportedFormat
org::gel::mauve::format::BaseFormat
org::gel::mauve::format::FastaFormat
org::gel::mauve::format::RawFormat
org::gel::mauve::format::GenbankEmblFormat
org::gel::mauve::format::EmblFormat
org::gel::mauve::format::GenbankFileFormat
org::gel::mauve::format::INSDseqFormat
org::gel::mauve::format::SupportedFormatFactory
org::gel::mauve::gui::SwingWorker
org::gel::mauve::gui::AlignWorker
org::gel::mauve::gui::SwingWorker::ThreadVar
org::gel::mauve::format::TestMain
org::gel::mauve::gui::dnd::TransferableObject
org::gel::mauve::gui::dnd::TransferableObject::Fetcher
org::gel::mauve::analysis::TreeAnalysis
org::gel::mauve::tree::TreeStore
org::gel::mauve::dcjx::VestigialDCJ
org::gel::mauve::ViewerMode
org::gel::mauve::remote::WargInterface
org::gel::mauve::recombination::WeakArgDataModel
org::gel::mauve::recombination::WeakArgModelBuilder
org::gel::mauve::recombination::WeakArgModelBuilder::WeakArgXmlHandler
org::gel::mauve::XMFAAlignment
org::gel::mauve::gui::sequence::ZiggyRectangularBeadRenderer
org::gel::mauve::histogram::ZoomHistogram
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