org::gel::mauve::tree::FileKey Class Reference

Inheritance diagram for org::gel::mauve::tree::FileKey:

[legend]Collaboration diagram for org::gel::mauve::tree::FileKey:

[legend]List of all members.

Public Member Functions
Object	copy ()
void	cropEnd (long size)
void	cropStart (long size)
	FileKey (long lend, long f_offset)
long	getFLength ()
long	getLength ()
long	getOffset ()
long	getSeqLength ()
void	incrementLength ()
void	setFLength (long f_length)
String	toString ()
Static Package Attributes
final long	serialVersionUID = 1
Private Attributes
long	f_length = 0
long	f_offset
long	lend
long	length = 0

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Constructor & Destructor Documentation

org::gel::mauve::tree::FileKey::FileKey (  long  lend, long  f_offset )  [inline]

Definition at line 16 of file FileKey.java.

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Member Function Documentation

Object org::gel::mauve::tree::FileKey::copy (   )  [inline]

Implements org::gel::mauve::tree::Key. Definition at line 58 of file FileKey.java.

void org::gel::mauve::tree::FileKey::cropEnd (  long  size  )  [inline]

Implements org::gel::mauve::tree::Key. Definition at line 52 of file FileKey.java.

void org::gel::mauve::tree::FileKey::cropStart (  long  size  )  [inline]

Implements org::gel::mauve::tree::Key. Definition at line 45 of file FileKey.java. References lend.

long org::gel::mauve::tree::FileKey::getFLength (   )  [inline]

Definition at line 37 of file FileKey.java. References f_length.

long org::gel::mauve::tree::FileKey::getLength (   )  [inline]

Implements org::gel::mauve::tree::Key. Definition at line 21 of file FileKey.java. Referenced by org::gel::mauve::XMFAAlignment::SuppressWarnings().

long org::gel::mauve::tree::FileKey::getOffset (   )  [inline]

Definition at line 33 of file FileKey.java. References f_offset. Referenced by org::gel::mauve::XMFAAlignment::SuppressWarnings().

long org::gel::mauve::tree::FileKey::getSeqLength (   )  [inline]

Implements org::gel::mauve::tree::Key. Definition at line 29 of file FileKey.java.

void org::gel::mauve::tree::FileKey::incrementLength (   )  [inline]

Definition at line 25 of file FileKey.java. Referenced by org::gel::mauve::XMFAAlignment::SuppressWarnings().

void org::gel::mauve::tree::FileKey::setFLength (  long  f_length  )  [inline]

Definition at line 41 of file FileKey.java. Referenced by org::gel::mauve::XMFAAlignment::SuppressWarnings().

String org::gel::mauve::tree::FileKey::toString (   )  [inline]

Definition at line 66 of file FileKey.java. References f_length, f_offset, and lend.

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Member Data Documentation

long org::gel::mauve::tree::FileKey::f_length = 0 [private]

Definition at line 14 of file FileKey.java. Referenced by getFLength(), and toString().

long org::gel::mauve::tree::FileKey::f_offset [private]

Definition at line 12 of file FileKey.java. Referenced by getOffset(), and toString().

long org::gel::mauve::tree::FileKey::lend [private]

Definition at line 8 of file FileKey.java. Referenced by cropStart(), and toString().

long org::gel::mauve::tree::FileKey::length = 0 [private]

Definition at line 10 of file FileKey.java.

final long org::gel::mauve::tree::FileKey::serialVersionUID = 1 [static, package]

Definition at line 6 of file FileKey.java.

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/tree/FileKey.java

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