org::gel::mauve::tree::FileKey Class Reference

Inheritance diagram for org::gel::mauve::tree::FileKey:

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Collaboration diagram for org::gel::mauve::tree::FileKey:

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List of all members.

Public Member Functions

Object copy ()
void cropEnd (long size)
void cropStart (long size)
 FileKey (long lend, long f_offset)
long getFLength ()
long getLength ()
long getOffset ()
long getSeqLength ()
void incrementLength ()
void setFLength (long f_length)
String toString ()

Static Package Attributes

final long serialVersionUID = 1

Private Attributes

long f_length = 0
long f_offset
long lend
long length = 0

Constructor & Destructor Documentation

org::gel::mauve::tree::FileKey::FileKey long  lend,
long  f_offset
[inline]
 

Definition at line 16 of file FileKey.java.


Member Function Documentation

Object org::gel::mauve::tree::FileKey::copy  )  [inline]
 

Implements org::gel::mauve::tree::Key.

Definition at line 58 of file FileKey.java.

void org::gel::mauve::tree::FileKey::cropEnd long  size  )  [inline]
 

Implements org::gel::mauve::tree::Key.

Definition at line 52 of file FileKey.java.

void org::gel::mauve::tree::FileKey::cropStart long  size  )  [inline]
 

Implements org::gel::mauve::tree::Key.

Definition at line 45 of file FileKey.java.

References lend.

long org::gel::mauve::tree::FileKey::getFLength  )  [inline]
 

Definition at line 37 of file FileKey.java.

References f_length.

long org::gel::mauve::tree::FileKey::getLength  )  [inline]
 

Implements org::gel::mauve::tree::Key.

Definition at line 21 of file FileKey.java.

Referenced by org::gel::mauve::XMFAAlignment::SuppressWarnings().

long org::gel::mauve::tree::FileKey::getOffset  )  [inline]
 

Definition at line 33 of file FileKey.java.

References f_offset.

Referenced by org::gel::mauve::XMFAAlignment::SuppressWarnings().

long org::gel::mauve::tree::FileKey::getSeqLength  )  [inline]
 

Implements org::gel::mauve::tree::Key.

Definition at line 29 of file FileKey.java.

void org::gel::mauve::tree::FileKey::incrementLength  )  [inline]
 

Definition at line 25 of file FileKey.java.

Referenced by org::gel::mauve::XMFAAlignment::SuppressWarnings().

void org::gel::mauve::tree::FileKey::setFLength long  f_length  )  [inline]
 

Definition at line 41 of file FileKey.java.

Referenced by org::gel::mauve::XMFAAlignment::SuppressWarnings().

String org::gel::mauve::tree::FileKey::toString  )  [inline]
 

Definition at line 66 of file FileKey.java.

References f_length, f_offset, and lend.


Member Data Documentation

long org::gel::mauve::tree::FileKey::f_length = 0 [private]
 

Definition at line 14 of file FileKey.java.

Referenced by getFLength(), and toString().

long org::gel::mauve::tree::FileKey::f_offset [private]
 

Definition at line 12 of file FileKey.java.

Referenced by getOffset(), and toString().

long org::gel::mauve::tree::FileKey::lend [private]
 

Definition at line 8 of file FileKey.java.

Referenced by cropStart(), and toString().

long org::gel::mauve::tree::FileKey::length = 0 [private]
 

Definition at line 10 of file FileKey.java.

final long org::gel::mauve::tree::FileKey::serialVersionUID = 1 [static, package]
 

Definition at line 6 of file FileKey.java.


The documentation for this class was generated from the following file:
Generated on Mon Aug 19 06:04:23 2013 for Mauve by doxygen 1.3.6