org::gel::mauve::summary::output::BackboneCompareFile Class Reference

outputs data from Match objects stored in Genome objects in Mauve in a format compatible with the .backbone file to see if the two match. More...

List of all members.

Public Member Functions
	BackboneCompareFile (BaseViewerModel model)
Protected Member Functions
int	getReferenceSequence ()
int	getSequenceCount ()
void	setColumnHeaders ()
Package Attributes
String	file = "Match_Backbone_Compare_File.txt"

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Detailed Description

outputs data from Match objects stored in Genome objects in Mauve in a format compatible with the .backbone file to see if the two match.

written 2/2/07 on Mauve 2.0. We're not currently sure how matches as displayed and as in the backbone file match up, which is the purpose for this class.

Author:

Anna I Rissman

Definition at line 15 of file BackboneCompareFile.java.

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Constructor & Destructor Documentation

org::gel::mauve::summary::output::BackboneCompareFile::BackboneCompareFile (  BaseViewerModel  model  )  [inline]

Definition at line 19 of file BackboneCompareFile.java.

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Member Function Documentation

int org::gel::mauve::summary::output::BackboneCompareFile::getReferenceSequence (   )  [inline, protected]

Definition at line 27 of file BackboneCompareFile.java.

int org::gel::mauve::summary::output::BackboneCompareFile::getSequenceCount (   )  [inline, protected]

Definition at line 32 of file BackboneCompareFile.java.

void org::gel::mauve::summary::output::BackboneCompareFile::setColumnHeaders (   )  [inline, protected]

Definition at line 23 of file BackboneCompareFile.java.

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Member Data Documentation

String org::gel::mauve::summary::output::BackboneCompareFile::file = "Match_Backbone_Compare_File.txt" [package]

Definition at line 17 of file BackboneCompareFile.java.

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/summary/output/BackboneCompareFile.java

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