org::gel::mauve::remote::MauveInterfaceImpl Class Reference

Inheritance diagram for org::gel::mauve::remote::MauveInterfaceImpl:

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Collaboration diagram for org::gel::mauve::remote::MauveInterfaceImpl:

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List of all members.

Public Member Functions

int getMouseBlock ()
long getMouseColumn ()
void hackOrder ()
boolean isRemote ()
void setDisplayBlockAndColumn (int block, long left_column, long right_column)
void setDisplayCoordinate (int genome, long coordinate)
void setDisplayRange (int genome, long left, long right)
void setGenomeOrder (int[] order)

Package Functions

 MauveInterfaceImpl (XmfaViewerModel model)

Package Attributes

XmfaViewerModel model

Constructor & Destructor Documentation

org::gel::mauve::remote::MauveInterfaceImpl::MauveInterfaceImpl XmfaViewerModel  model  )  [inline, package]
 

Definition at line 8 of file MauveInterfaceImpl.java.


Member Function Documentation

int org::gel::mauve::remote::MauveInterfaceImpl::getMouseBlock  )  [inline]
 

Implements org::gel::mauve::remote::MauveInterface.

Definition at line 63 of file MauveInterfaceImpl.java.

References org::gel::mauve::BaseViewerModel::getHighlightCoordinate(), org::gel::mauve::BaseViewerModel::getHighlightGenome(), and org::gel::mauve::XmfaViewerModel::getLCBAndColumn().

long org::gel::mauve::remote::MauveInterfaceImpl::getMouseColumn  )  [inline]
 

Implements org::gel::mauve::remote::MauveInterface.

Definition at line 69 of file MauveInterfaceImpl.java.

References org::gel::mauve::BaseViewerModel::getHighlightCoordinate(), org::gel::mauve::BaseViewerModel::getHighlightGenome(), and org::gel::mauve::XmfaViewerModel::getLCBAndColumn().

void org::gel::mauve::remote::MauveInterfaceImpl::hackOrder  )  [inline]
 

Implements org::gel::mauve::remote::MauveInterface.

Definition at line 15 of file MauveInterfaceImpl.java.

References org::gel::mauve::BaseViewerModel::reorderSequences().

boolean org::gel::mauve::remote::MauveInterfaceImpl::isRemote  )  [inline]
 

Definition at line 58 of file MauveInterfaceImpl.java.

void org::gel::mauve::remote::MauveInterfaceImpl::setDisplayBlockAndColumn int  block,
long  left_column,
long  right_column
[inline]
 

Implements org::gel::mauve::remote::MauveInterface.

Definition at line 32 of file MauveInterfaceImpl.java.

References org::gel::mauve::XmfaViewerModel::alignView(), org::gel::mauve::XmfaViewerModel::getColumnCoordinates(), org::gel::mauve::BaseViewerModel::getGenomeBySourceIndex(), org::gel::mauve::BaseViewerModel::getSequenceCount(), org::gel::mauve::Genome::getViewLength(), and org::gel::mauve::BaseViewerModel::zoomAndCenter().

void org::gel::mauve::remote::MauveInterfaceImpl::setDisplayCoordinate int  genome,
long  coordinate
[inline]
 

Implements org::gel::mauve::remote::MauveInterface.

Definition at line 20 of file MauveInterfaceImpl.java.

References org::gel::mauve::XmfaViewerModel::alignView(), and org::gel::mauve::BaseViewerModel::getGenomeBySourceIndex().

void org::gel::mauve::remote::MauveInterfaceImpl::setDisplayRange int  genome,
long  left,
long  right
[inline]
 

Implements org::gel::mauve::remote::MauveInterface.

Definition at line 24 of file MauveInterfaceImpl.java.

References org::gel::mauve::BaseViewerModel::getGenomeBySourceIndex(), org::gel::mauve::Genome::getViewLength(), and org::gel::mauve::BaseViewerModel::zoomAndCenter().

void org::gel::mauve::remote::MauveInterfaceImpl::setGenomeOrder int[]  order  )  [inline]
 

Implements org::gel::mauve::remote::MauveInterface.

Definition at line 12 of file MauveInterfaceImpl.java.

References org::gel::mauve::BaseViewerModel::reorderSequences().


Member Data Documentation

XmfaViewerModel org::gel::mauve::remote::MauveInterfaceImpl::model [package]
 

Definition at line 7 of file MauveInterfaceImpl.java.


The documentation for this class was generated from the following file:
Generated on Mon Aug 19 06:04:19 2013 for Mauve by doxygen 1.3.6