org::gel::mauve::remote::MauveInterfaceImpl Class Reference

Inheritance diagram for org::gel::mauve::remote::MauveInterfaceImpl:

[legend]Collaboration diagram for org::gel::mauve::remote::MauveInterfaceImpl:

[legend]List of all members.

Public Member Functions
int	getMouseBlock ()
long	getMouseColumn ()
void	hackOrder ()
boolean	isRemote ()
void	setDisplayBlockAndColumn (int block, long left_column, long right_column)
void	setDisplayCoordinate (int genome, long coordinate)
void	setDisplayRange (int genome, long left, long right)
void	setGenomeOrder (int[] order)
Package Functions
	MauveInterfaceImpl (XmfaViewerModel model)
Package Attributes
XmfaViewerModel	model

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Constructor & Destructor Documentation

org::gel::mauve::remote::MauveInterfaceImpl::MauveInterfaceImpl (  XmfaViewerModel  model  )  [inline, package]

Definition at line 8 of file MauveInterfaceImpl.java.

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Member Function Documentation

int org::gel::mauve::remote::MauveInterfaceImpl::getMouseBlock (   )  [inline]

Implements org::gel::mauve::remote::MauveInterface. Definition at line 63 of file MauveInterfaceImpl.java. References org::gel::mauve::BaseViewerModel::getHighlightCoordinate(), org::gel::mauve::BaseViewerModel::getHighlightGenome(), and org::gel::mauve::XmfaViewerModel::getLCBAndColumn().

long org::gel::mauve::remote::MauveInterfaceImpl::getMouseColumn (   )  [inline]

Implements org::gel::mauve::remote::MauveInterface. Definition at line 69 of file MauveInterfaceImpl.java. References org::gel::mauve::BaseViewerModel::getHighlightCoordinate(), org::gel::mauve::BaseViewerModel::getHighlightGenome(), and org::gel::mauve::XmfaViewerModel::getLCBAndColumn().

void org::gel::mauve::remote::MauveInterfaceImpl::hackOrder (   )  [inline]

Implements org::gel::mauve::remote::MauveInterface. Definition at line 15 of file MauveInterfaceImpl.java. References org::gel::mauve::BaseViewerModel::reorderSequences().

boolean org::gel::mauve::remote::MauveInterfaceImpl::isRemote (   )  [inline]

Definition at line 58 of file MauveInterfaceImpl.java.

void org::gel::mauve::remote::MauveInterfaceImpl::setDisplayBlockAndColumn (  int  block, long  left_column, long  right_column )  [inline]

Implements org::gel::mauve::remote::MauveInterface. Definition at line 32 of file MauveInterfaceImpl.java. References org::gel::mauve::XmfaViewerModel::alignView(), org::gel::mauve::XmfaViewerModel::getColumnCoordinates(), org::gel::mauve::BaseViewerModel::getGenomeBySourceIndex(), org::gel::mauve::BaseViewerModel::getSequenceCount(), org::gel::mauve::Genome::getViewLength(), and org::gel::mauve::BaseViewerModel::zoomAndCenter().

void org::gel::mauve::remote::MauveInterfaceImpl::setDisplayCoordinate (  int  genome, long  coordinate )  [inline]

Implements org::gel::mauve::remote::MauveInterface. Definition at line 20 of file MauveInterfaceImpl.java. References org::gel::mauve::XmfaViewerModel::alignView(), and org::gel::mauve::BaseViewerModel::getGenomeBySourceIndex().

void org::gel::mauve::remote::MauveInterfaceImpl::setDisplayRange (  int  genome, long  left, long  right )  [inline]

Implements org::gel::mauve::remote::MauveInterface. Definition at line 24 of file MauveInterfaceImpl.java. References org::gel::mauve::BaseViewerModel::getGenomeBySourceIndex(), org::gel::mauve::Genome::getViewLength(), and org::gel::mauve::BaseViewerModel::zoomAndCenter().

void org::gel::mauve::remote::MauveInterfaceImpl::setGenomeOrder (  int[]  order  )  [inline]

Implements org::gel::mauve::remote::MauveInterface. Definition at line 12 of file MauveInterfaceImpl.java. References org::gel::mauve::BaseViewerModel::reorderSequences().

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Member Data Documentation

XmfaViewerModel org::gel::mauve::remote::MauveInterfaceImpl::model [package]

Definition at line 7 of file MauveInterfaceImpl.java.

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/remote/MauveInterfaceImpl.java

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