org::gel::mauve::recombination::WeakArgModelBuilder Class Reference

List of all members.

Static Public Member Functions

WeakArgDataModel buildModel (File f, XmfaViewerModel xmfa) throws FileNotFoundException, IOException, SAXException

Static Protected Member Functions

WeakArgDataModel readStoredData (File f) throws IOException
WeakArgDataModel readWargXmlBzip2 (FileInputStream fis, XmfaViewerModel xmfa) throws FileNotFoundException, IOException, SAXException

Static Private Member Functions

byte[] toByteArray (int[] data)

Member Function Documentation

WeakArgDataModel org::gel::mauve::recombination::WeakArgModelBuilder::buildModel File  f,
XmfaViewerModel  xmfa
throws FileNotFoundException, IOException, SAXException [inline, static]
 

Definition at line 29 of file WeakArgModelBuilder.java.

References org::gel::mauve::recombination::WeakArgDataModel::incoming, readStoredData(), and readWargXmlBzip2().

WeakArgDataModel org::gel::mauve::recombination::WeakArgModelBuilder::readStoredData File  f  )  throws IOException [inline, static, protected]
 

Definition at line 94 of file WeakArgModelBuilder.java.

Referenced by buildModel().

WeakArgDataModel org::gel::mauve::recombination::WeakArgModelBuilder::readWargXmlBzip2 FileInputStream  fis,
XmfaViewerModel  xmfa
throws FileNotFoundException, IOException, SAXException [inline, static, protected]
 

Definition at line 58 of file WeakArgModelBuilder.java.

References org::gel::mauve::recombination::WeakArgDataModel::incoming, org::gel::mauve::recombination::WeakArgModelBuilder::WeakArgXmlHandler::inEdgeTally, org::gel::mauve::recombination::WeakArgModelBuilder::WeakArgXmlHandler::outEdgeTally, org::gel::mauve::recombination::WeakArgDataModel::outgoing, org::gel::mauve::histogram::ZoomHistogram::setGenomeLevelData(), org::gel::mauve::recombination::WeakArgModelBuilder::WeakArgXmlHandler::summarize(), and toByteArray().

Referenced by buildModel().

byte [] org::gel::mauve::recombination::WeakArgModelBuilder::toByteArray int[]  data  )  [inline, static, private]
 

Definition at line 86 of file WeakArgModelBuilder.java.

Referenced by readWargXmlBzip2().


The documentation for this class was generated from the following file:
Generated on Mon Aug 19 06:04:18 2013 for Mauve by doxygen 1.3.6