org::gel::mauve::recombination::WeakArgModelBuilder Class Reference

List of all members.

Static Public Member Functions
WeakArgDataModel	buildModel (File f, XmfaViewerModel xmfa) throws FileNotFoundException, IOException, SAXException
Static Protected Member Functions
WeakArgDataModel	readStoredData (File f) throws IOException
WeakArgDataModel	readWargXmlBzip2 (FileInputStream fis, XmfaViewerModel xmfa) throws FileNotFoundException, IOException, SAXException
Static Private Member Functions
byte[]	toByteArray (int[] data)

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Member Function Documentation

WeakArgDataModel org::gel::mauve::recombination::WeakArgModelBuilder::buildModel (  File  f, XmfaViewerModel  xmfa )  throws FileNotFoundException, IOException, SAXException [inline, static]

Definition at line 29 of file WeakArgModelBuilder.java. References org::gel::mauve::recombination::WeakArgDataModel::incoming, readStoredData(), and readWargXmlBzip2().

WeakArgDataModel org::gel::mauve::recombination::WeakArgModelBuilder::readStoredData (  File  f  )  throws IOException [inline, static, protected]

Definition at line 94 of file WeakArgModelBuilder.java. Referenced by buildModel().

WeakArgDataModel org::gel::mauve::recombination::WeakArgModelBuilder::readWargXmlBzip2 (  FileInputStream  fis, XmfaViewerModel  xmfa )  throws FileNotFoundException, IOException, SAXException [inline, static, protected]

Definition at line 58 of file WeakArgModelBuilder.java. References org::gel::mauve::recombination::WeakArgDataModel::incoming, org::gel::mauve::recombination::WeakArgModelBuilder::WeakArgXmlHandler::inEdgeTally, org::gel::mauve::recombination::WeakArgModelBuilder::WeakArgXmlHandler::outEdgeTally, org::gel::mauve::recombination::WeakArgDataModel::outgoing, org::gel::mauve::histogram::ZoomHistogram::setGenomeLevelData(), org::gel::mauve::recombination::WeakArgModelBuilder::WeakArgXmlHandler::summarize(), and toByteArray(). Referenced by buildModel().

byte [] org::gel::mauve::recombination::WeakArgModelBuilder::toByteArray (  int[]  data  )  [inline, static, private]

Definition at line 86 of file WeakArgModelBuilder.java. Referenced by readWargXmlBzip2().

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/recombination/WeakArgModelBuilder.java

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