org::gel::mauve::gui::sequence::MatchPopupMenu Class Reference

A popup menu showing the sequence coordinates covered by an ungapped alignment. More...

Collaboration diagram for org::gel::mauve::gui::sequence::MatchPopupMenu:

[legend]List of all members.

Public Member Functions
void	actionPerformed (ActionEvent e)
void	addLCBOptions (int lcb_id)
void	addMatch (Match m)
void	itemStateChanged (ItemEvent e)
	this gets called when the "Keep LCB" item is selected
	MatchPopupMenu (RearrangementPanel rrpanel, BaseViewerModel model, Genome g)
Package Attributes
Genome	g
int	keep_item = Integer.MAX_VALUE
int	lcb_id
LinkedList	match_list
BaseViewerModel	model
int	remove_item = Integer.MAX_VALUE
RearrangementPanel	rrpanel
Static Package Attributes
final String	keep_string = "Keep this LCB"
final String	remove_string = "Remove this LCB"

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Detailed Description

A popup menu showing the sequence coordinates covered by an ungapped alignment.

Definition at line 23 of file MatchPopupMenu.java.

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Constructor & Destructor Documentation

org::gel::mauve::gui::sequence::MatchPopupMenu::MatchPopupMenu (  RearrangementPanel  rrpanel, BaseViewerModel  model, Genome  g )  [inline]

Definition at line 42 of file MatchPopupMenu.java. References match_list.

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Member Function Documentation

void org::gel::mauve::gui::sequence::MatchPopupMenu::actionPerformed (  ActionEvent  e  )  [inline]

Definition at line 68 of file MatchPopupMenu.java. References org::gel::mauve::BaseViewerModel::alignView(), keep_item, match_list, and remove_item.

void org::gel::mauve::gui::sequence::MatchPopupMenu::addLCBOptions (  int  lcb_id  )  [inline]

Definition at line 50 of file MatchPopupMenu.java. References keep_item, and keep_string.

void org::gel::mauve::gui::sequence::MatchPopupMenu::addMatch (  Match  m  )  [inline]

Definition at line 60 of file MatchPopupMenu.java. References match_list.

void org::gel::mauve::gui::sequence::MatchPopupMenu::itemStateChanged (  ItemEvent  e  )  [inline]

this gets called when the "Keep LCB" item is selected Definition at line 90 of file MatchPopupMenu.java.

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Member Data Documentation

Genome org::gel::mauve::gui::sequence::MatchPopupMenu::g [package]

Definition at line 28 of file MatchPopupMenu.java.

int org::gel::mauve::gui::sequence::MatchPopupMenu::keep_item = Integer.MAX_VALUE [package]

Definition at line 36 of file MatchPopupMenu.java. Referenced by actionPerformed(), and addLCBOptions().

final String org::gel::mauve::gui::sequence::MatchPopupMenu::keep_string = "Keep this LCB" [static, package]

Definition at line 40 of file MatchPopupMenu.java. Referenced by addLCBOptions().

int org::gel::mauve::gui::sequence::MatchPopupMenu::lcb_id [package]

Definition at line 32 of file MatchPopupMenu.java.

LinkedList org::gel::mauve::gui::sequence::MatchPopupMenu::match_list [package]

Definition at line 24 of file MatchPopupMenu.java. Referenced by actionPerformed(), addMatch(), and MatchPopupMenu().

BaseViewerModel org::gel::mauve::gui::sequence::MatchPopupMenu::model [package]

Definition at line 30 of file MatchPopupMenu.java.

int org::gel::mauve::gui::sequence::MatchPopupMenu::remove_item = Integer.MAX_VALUE [package]

Definition at line 34 of file MatchPopupMenu.java. Referenced by actionPerformed().

final String org::gel::mauve::gui::sequence::MatchPopupMenu::remove_string = "Remove this LCB" [static, package]

Definition at line 38 of file MatchPopupMenu.java.

RearrangementPanel org::gel::mauve::gui::sequence::MatchPopupMenu::rrpanel [package]

Definition at line 26 of file MatchPopupMenu.java.

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/gui/sequence/MatchPopupMenu.java

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