org::gel::mauve::gui::navigation::NavigationPanel Class Reference

A panel that allows a user to set up a constraint for searching features. More...

Inheritance diagram for org::gel::mauve::gui::navigation::NavigationPanel:

[legend]Collaboration diagram for org::gel::mauve::gui::navigation::NavigationPanel:

[legend]List of all members.

Public Member Functions
void	actionPerformed (ActionEvent e)
	responds when a user elects to remove this navigation panel
boolean	dataValid ()
	checks if the user has entered valid information to search by
String[]	getSearchCriteria ()
	returns the selections the user made using this navigation panel
	NavigationPanel (SequenceNavigator nav)
	constructs a new NavigationPanel and adds it to the SequenceNavigator so a user may add an additional constraint
Public Attributes
Vector	nav_methods
	vector of fields available to navigate by
Protected Member Functions
void	initGUI ()
	initializes gui components
void	setNavigationChoices ()
	sets choices available to search by- includes all field names in all genomes and pre-made choice groupings
Protected Attributes
JRadioButton	contains
	If selected, returned features should have annotations with values that contain the specified input.
JRadioButton	equals
	If selected, this constraint should be an exact match.
JTextField	input
	the value to search for.
JComboBox	nav_chooser
	Contains choices for annotation keys to search for.
SequenceNavigator	navigator
	reference to the SequenceNavigator this panel is associated with
JButton	remove
	If this button is pressed, this panel is removed from the SequenceNavigator.
Static Protected Attributes
final String	CONTAINS = "contains"
final String	EQUALS = "equals"
	Strings representing button names and actions.

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Detailed Description

A panel that allows a user to set up a constraint for searching features.

Author:

rissman

Definition at line 27 of file NavigationPanel.java.

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Constructor & Destructor Documentation

org::gel::mauve::gui::navigation::NavigationPanel::NavigationPanel (  SequenceNavigator  nav  )  [inline]

constructs a new NavigationPanel and adds it to the SequenceNavigator so a user may add an additional constraint Parameters: nav  The SequenceNavigator that will hold this panel Definition at line 81 of file NavigationPanel.java. References initGUI(), and setNavigationChoices().

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Member Function Documentation

void org::gel::mauve::gui::navigation::NavigationPanel::actionPerformed (  ActionEvent  e  )  [inline]

responds when a user elects to remove this navigation panel Parameters: e  The action event representing the button being clicked Definition at line 196 of file NavigationPanel.java. References remove, and org::gel::mauve::gui::SequenceNavigator::removeNavigationPanel().

boolean org::gel::mauve::gui::navigation::NavigationPanel::dataValid (   )  [inline]

checks if the user has entered valid information to search by Returns: True if the data entered is valid Definition at line 143 of file NavigationPanel.java. References org::gel::mauve::gui::SequenceNavigator::makeConstraintVisible(), and nav_chooser. Referenced by org::gel::mauve::gui::SequenceNavigator::getValidCount().

String [] org::gel::mauve::gui::navigation::NavigationPanel::getSearchCriteria (   )  [inline]

returns the selections the user made using this navigation panel Returns: String array length 3. The 0 position is field name, the 1 the value the field should have, and 2 is a String value representing a boolean--true if the user wants an exact match, false otherwise Definition at line 168 of file NavigationPanel.java. References equals, and nav_chooser.

void org::gel::mauve::gui::navigation::NavigationPanel::initGUI (   )  [inline, protected]

initializes gui components Definition at line 93 of file NavigationPanel.java. References org::gel::mauve::gui::SequenceNavigator::addNavigationPanel(), CONTAINS, contains, EQUALS, equals, nav_chooser, nav_methods, and remove. Referenced by NavigationPanel().

void org::gel::mauve::gui::navigation::NavigationPanel::setNavigationChoices (   )  [inline, protected]

sets choices available to search by- includes all field names in all genomes and pre-made choice groupings Definition at line 181 of file NavigationPanel.java. References org::gel::mauve::gui::SequenceNavigator::getGenomeKeys(), and nav_methods. Referenced by NavigationPanel().

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Member Data Documentation

final String org::gel::mauve::gui::navigation::NavigationPanel::CONTAINS = "contains" [static, protected]

Definition at line 67 of file NavigationPanel.java. Referenced by initGUI().

JRadioButton org::gel::mauve::gui::navigation::NavigationPanel::contains [protected]

If selected, returned features should have annotations with values that contain the specified input. Definition at line 55 of file NavigationPanel.java. Referenced by initGUI().

final String org::gel::mauve::gui::navigation::NavigationPanel::EQUALS = "equals" [static, protected]

Strings representing button names and actions. Definition at line 65 of file NavigationPanel.java. Referenced by initGUI().

JRadioButton org::gel::mauve::gui::navigation::NavigationPanel::equals [protected]

If selected, this constraint should be an exact match. Definition at line 49 of file NavigationPanel.java. Referenced by getSearchCriteria(), and initGUI().

JTextField org::gel::mauve::gui::navigation::NavigationPanel::input [protected]

the value to search for. Definition at line 39 of file NavigationPanel.java.

JComboBox org::gel::mauve::gui::navigation::NavigationPanel::nav_chooser [protected]

Contains choices for annotation keys to search for. Multiple values can be entered and should be comma-separated Definition at line 34 of file NavigationPanel.java. Referenced by dataValid(), getSearchCriteria(), and initGUI().

Vector org::gel::mauve::gui::navigation::NavigationPanel::nav_methods

vector of fields available to navigate by Definition at line 72 of file NavigationPanel.java. Referenced by initGUI(), and setNavigationChoices().

SequenceNavigator org::gel::mauve::gui::navigation::NavigationPanel::navigator [protected]

reference to the SequenceNavigator this panel is associated with Definition at line 44 of file NavigationPanel.java.

JButton org::gel::mauve::gui::navigation::NavigationPanel::remove [protected]

If this button is pressed, this panel is removed from the SequenceNavigator. Definition at line 60 of file NavigationPanel.java. Referenced by actionPerformed(), and initGUI().

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/gui/navigation/NavigationPanel.java

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