org::gel::mauve::format::RawFastaBridgeFilterReader Class Reference

List of all members.

Public Member Functions
void	mark (int readAheadLimit) throws IOException
boolean	markSupported ()
int	read (char[] cbuf, int off, int len) throws IOException
int	read () throws IOException
void	reset () throws IOException
long	skip (long n) throws IOException
Protected Member Functions
	RawFastaBridgeFilterReader (Reader in)
Private Attributes
int	remainingHeader = HEADER.length ()
Static Private Attributes
final String	HEADER = ">raw\n"

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Constructor & Destructor Documentation

org::gel::mauve::format::RawFastaBridgeFilterReader::RawFastaBridgeFilterReader (  Reader  in  )  [inline, protected]

Definition at line 12 of file RawFastaBridgeFilterReader.java.

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Member Function Documentation

void org::gel::mauve::format::RawFastaBridgeFilterReader::mark (  int  readAheadLimit  )  throws IOException [inline]

Definition at line 88 of file RawFastaBridgeFilterReader.java.

boolean org::gel::mauve::format::RawFastaBridgeFilterReader::markSupported (   )  [inline]

Definition at line 97 of file RawFastaBridgeFilterReader.java.

int org::gel::mauve::format::RawFastaBridgeFilterReader::read (  char[]  cbuf, int  off, int  len )  throws IOException [inline]

Definition at line 36 of file RawFastaBridgeFilterReader.java. References read(), and remainingHeader.

int org::gel::mauve::format::RawFastaBridgeFilterReader::read (   )  throws IOException [inline]

Definition at line 21 of file RawFastaBridgeFilterReader.java. References HEADER, and remainingHeader. Referenced by read().

void org::gel::mauve::format::RawFastaBridgeFilterReader::reset (   )  throws IOException [inline]

Definition at line 79 of file RawFastaBridgeFilterReader.java.

long org::gel::mauve::format::RawFastaBridgeFilterReader::skip (  long  n  )  throws IOException [inline]

Definition at line 57 of file RawFastaBridgeFilterReader.java. References remainingHeader.

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Member Data Documentation

final String org::gel::mauve::format::RawFastaBridgeFilterReader::HEADER = ">raw\n" [static, private]

Definition at line 8 of file RawFastaBridgeFilterReader.java. Referenced by read().

int org::gel::mauve::format::RawFastaBridgeFilterReader::remainingHeader = HEADER.length () [private]

Definition at line 10 of file RawFastaBridgeFilterReader.java. Referenced by read(), and skip().

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/format/RawFastaBridgeFilterReader.java

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