org::gel::mauve::format::RawFastaBridgeFilterReader Class Reference

List of all members.

Public Member Functions

void mark (int readAheadLimit) throws IOException
boolean markSupported ()
int read (char[] cbuf, int off, int len) throws IOException
int read () throws IOException
void reset () throws IOException
long skip (long n) throws IOException

Protected Member Functions

 RawFastaBridgeFilterReader (Reader in)

Private Attributes

int remainingHeader = HEADER.length ()

Static Private Attributes

final String HEADER = ">raw\n"

Constructor & Destructor Documentation

org::gel::mauve::format::RawFastaBridgeFilterReader::RawFastaBridgeFilterReader Reader  in  )  [inline, protected]

Definition at line 12 of file

Member Function Documentation

void org::gel::mauve::format::RawFastaBridgeFilterReader::mark int  readAheadLimit  )  throws IOException [inline]

Definition at line 88 of file

boolean org::gel::mauve::format::RawFastaBridgeFilterReader::markSupported  )  [inline]

Definition at line 97 of file

int org::gel::mauve::format::RawFastaBridgeFilterReader::read char[]  cbuf,
int  off,
int  len
throws IOException [inline]

Definition at line 36 of file

References read(), and remainingHeader.

int org::gel::mauve::format::RawFastaBridgeFilterReader::read  )  throws IOException [inline]

Definition at line 21 of file

References HEADER, and remainingHeader.

Referenced by read().

void org::gel::mauve::format::RawFastaBridgeFilterReader::reset  )  throws IOException [inline]

Definition at line 79 of file

long org::gel::mauve::format::RawFastaBridgeFilterReader::skip long  n  )  throws IOException [inline]

Definition at line 57 of file

References remainingHeader.

Member Data Documentation

final String org::gel::mauve::format::RawFastaBridgeFilterReader::HEADER = ">raw\n" [static, private]

Definition at line 8 of file

Referenced by read().

int org::gel::mauve::format::RawFastaBridgeFilterReader::remainingHeader = HEADER.length () [private]

Definition at line 10 of file

Referenced by read(), and skip().

The documentation for this class was generated from the following file:
Generated on Mon Aug 19 06:04:00 2013 for Mauve by doxygen 1.3.6