org::gel::mauve::format::GenbankEmblFormat Class Reference

Inheritance diagram for org::gel::mauve::format::GenbankEmblFormat:

[legend]Collaboration diagram for org::gel::mauve::format::GenbankEmblFormat:

[legend]List of all members.

Public Member Functions
String	getChromNameFromDescription (Sequence seq)
String	getChromosomeName (Sequence s)
FilterCacheSpec[]	getFilterCacheSpecs ()
String	getSequenceName (Sequence s)
Static Package Functions
	[static initializer]
Static Private Attributes
FilterCacheSpec[]	specs = new FilterCacheSpec [11]

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Member Function Documentation

org::gel::mauve::format::GenbankEmblFormat::[static initializer] (   )  [inline, static, package]

String org::gel::mauve::format::GenbankEmblFormat::getChromNameFromDescription (  Sequence  seq  )  [inline]

Definition at line 173 of file GenbankEmblFormat.java. Referenced by getChromosomeName().

String org::gel::mauve::format::GenbankEmblFormat::getChromosomeName (  Sequence  s  )  [inline]

Parameters: s  Returns: Return a human-readable name for the subsequence. Implements org::gel::mauve::SupportedFormat. Definition at line 130 of file GenbankEmblFormat.java. References getChromNameFromDescription().

FilterCacheSpec [] org::gel::mauve::format::GenbankEmblFormat::getFilterCacheSpecs (   )  [inline]

Implements org::gel::mauve::SupportedFormat. Definition at line 244 of file GenbankEmblFormat.java. References specs.

String org::gel::mauve::format::GenbankEmblFormat::getSequenceName (  Sequence  s  )  [inline]

Parameters: s  Returns: Return a human-readable name for the entire sequence. Implements org::gel::mauve::SupportedFormat. Definition at line 209 of file GenbankEmblFormat.java.

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Member Data Documentation

FilterCacheSpec [] org::gel::mauve::format::GenbankEmblFormat::specs = new FilterCacheSpec [11] [static, private]

Definition at line 29 of file GenbankEmblFormat.java. Referenced by getFilterCacheSpecs().

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/format/GenbankEmblFormat.java

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