org::gel::mauve::format::GenbankEmblFormat Class Reference

Inheritance diagram for org::gel::mauve::format::GenbankEmblFormat:

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Collaboration diagram for org::gel::mauve::format::GenbankEmblFormat:

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List of all members.

Public Member Functions

String getChromNameFromDescription (Sequence seq)
String getChromosomeName (Sequence s)
FilterCacheSpec[] getFilterCacheSpecs ()
String getSequenceName (Sequence s)

Static Package Functions

 [static initializer]

Static Private Attributes

FilterCacheSpec[] specs = new FilterCacheSpec [11]

Member Function Documentation

org::gel::mauve::format::GenbankEmblFormat::[static initializer]  )  [inline, static, package]
 

String org::gel::mauve::format::GenbankEmblFormat::getChromNameFromDescription Sequence  seq  )  [inline]
 

Definition at line 173 of file GenbankEmblFormat.java.

Referenced by getChromosomeName().

String org::gel::mauve::format::GenbankEmblFormat::getChromosomeName Sequence  s  )  [inline]
 

Parameters:
s 
Returns:
Return a human-readable name for the subsequence.

Implements org::gel::mauve::SupportedFormat.

Definition at line 130 of file GenbankEmblFormat.java.

References getChromNameFromDescription().

FilterCacheSpec [] org::gel::mauve::format::GenbankEmblFormat::getFilterCacheSpecs  )  [inline]
 

Implements org::gel::mauve::SupportedFormat.

Definition at line 244 of file GenbankEmblFormat.java.

References specs.

String org::gel::mauve::format::GenbankEmblFormat::getSequenceName Sequence  s  )  [inline]
 

Parameters:
s 
Returns:
Return a human-readable name for the entire sequence.

Implements org::gel::mauve::SupportedFormat.

Definition at line 209 of file GenbankEmblFormat.java.


Member Data Documentation

FilterCacheSpec [] org::gel::mauve::format::GenbankEmblFormat::specs = new FilterCacheSpec [11] [static, private]
 

Definition at line 29 of file GenbankEmblFormat.java.

Referenced by getFilterCacheSpecs().


The documentation for this class was generated from the following file:
Generated on Mon Aug 19 06:03:59 2013 for Mauve by doxygen 1.3.6