org::gel::mauve::contigs::FeatureFixer Class Reference

Inheritance diagram for org::gel::mauve::contigs::FeatureFixer:

[legend]Collaboration diagram for org::gel::mauve::contigs::FeatureFixer:

[legend]List of all members.

Public Member Functions
void	process ()
void	readOrdered (String file)
Static Public Member Functions
void	main (String[] args)

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Member Function Documentation

void org::gel::mauve::contigs::FeatureFixer::main (  String[]  args  )  [inline, static]

Parameters: args  Reimplemented from org::gel::mauve::contigs::ContigReorderer. Definition at line 80 of file FeatureFixer.java.

void org::gel::mauve::contigs::FeatureFixer::process (   )  [inline]

Reimplemented from org::gel::mauve::contigs::ContigReorderer. Definition at line 45 of file FeatureFixer.java. References org::gel::mauve::Genome::getChromosomes(), org::gel::mauve::Chromosome::getName(), and readOrdered().

void org::gel::mauve::contigs::FeatureFixer::readOrdered (  String  file  )  [inline]

Reimplemented from org::gel::mauve::contigs::ContigReorderer. Definition at line 15 of file FeatureFixer.java. References org::gel::mauve::Genome::getChromosomes(), org::gel::mauve::Chromosome::getName(), and org::gel::mauve::Chromosome::setName(). Referenced by process().

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/contigs/FeatureFixer.java

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