org::gel::mauve::color::NormalizedOffsetColorScheme Class Reference

Colors the matches based on their generalized offsets using the entire color spectrum evenly. More...

Inheritance diagram for org::gel::mauve::color::NormalizedOffsetColorScheme:

[legend]Collaboration diagram for org::gel::mauve::color::NormalizedOffsetColorScheme:


Public Member Functions
void	apply (BaseViewerModel model)
String	toString ()
Private Member Functions
Vector	getMatchesByOffset (BaseViewerModel model)
Private Attributes
Vector	matchesByOffset
long	uniqueOffsetCount
Static Private Attributes
final Comparator	MATCH_OFFSET_COMPARATOR

Detailed Description

Colors the matches based on their generalized offsets using the entire color spectrum evenly.

Uses a very simple linear mapping approach for now. It can be tricked up later.

void org::gel::mauve::color::NormalizedOffsetColorScheme::apply ( BaseViewerModel model ) [inline]

Parameters:

model Apply the color scheme to the elements of the model. At a minimum, the matches of the model must be assigned colors.

Implements org::gel::mauve::ColorScheme.
Definition at line 29 of file NormalizedOffsetColorScheme.java.
References org::gel::mauve::Match::color, org::gel::mauve::BaseViewerModel::getMatchCount(), getMatchesByOffset(), matchesByOffset, and uniqueOffsetCount.

Vector org::gel::mauve::color::NormalizedOffsetColorScheme::getMatchesByOffset ( BaseViewerModel model ) [inline, private]

Returns:
Returns the list of the matches sorted by their generalized offset.

Definition at line 58 of file NormalizedOffsetColorScheme.java.
References MATCH_OFFSET_COMPARATOR, matchesByOffset, org::gel::mauve::BaseViewerModel::sortedMatches(), and uniqueOffsetCount.
Referenced by apply().

String org::gel::mauve::color::NormalizedOffsetColorScheme::toString ( ) [inline]

Definition at line 79 of file NormalizedOffsetColorScheme.java.

final Comparator org::gel::mauve::color::NormalizedOffsetColorScheme::MATCH_OFFSET_COMPARATOR [static, private]

Initial value:
new Comparator () { public int compare (Object o1, Object o2) { Match a = (Match) o1; Match b = (Match) o2; return (int) (a.offset () - b.offset ()); } }

Definition at line 17 of file NormalizedOffsetColorScheme.java.
Referenced by getMatchesByOffset().

The documentation for this class was generated from the following file:

Generated on Fri May 24 06:03:52 2013 for Mauve by

1.3.6