org::gel::mauve::color::NormalizedMultiplicityTypeColorScheme Class Reference

Color matches by their multiplicity and the sequences they match in. More...

Inheritance diagram for org::gel::mauve::color::NormalizedMultiplicityTypeColorScheme:

[legend]Collaboration diagram for org::gel::mauve::color::NormalizedMultiplicityTypeColorScheme:


Public Member Functions
void	apply (BaseViewerModel model)
String	toString ()
Static Private Attributes
final Comparator	MULTIPLICITY_TYPE_COMPARATOR

Detailed Description

Color matches by their multiplicity and the sequences they match in.

Will not work with more than 62 sequences.

void org::gel::mauve::color::NormalizedMultiplicityTypeColorScheme::apply ( BaseViewerModel model ) [inline]

Parameters:

model Apply the color scheme to the elements of the model. At a minimum, the matches of the model must be assigned colors.

Implements org::gel::mauve::ColorScheme.
Definition at line 24 of file NormalizedMultiplicityTypeColorScheme.java.
References org::gel::mauve::Match::color, org::gel::mauve::BaseViewerModel::getMatchCount(), org::gel::mauve::BaseViewerModel::getSequenceCount(), MULTIPLICITY_TYPE_COMPARATOR, and org::gel::mauve::BaseViewerModel::sortedMatches().

String org::gel::mauve::color::NormalizedMultiplicityTypeColorScheme::toString ( ) [inline]

Definition at line 69 of file NormalizedMultiplicityTypeColorScheme.java.

final Comparator org::gel::mauve::color::NormalizedMultiplicityTypeColorScheme::MULTIPLICITY_TYPE_COMPARATOR [static, private]

Initial value:
new Comparator () { public int compare (Object o1, Object o2) { Match a = (Match) o1; Match b = (Match) o2; return (int) (a.multiplicityType () - b.multiplicityType ()); } }

Definition at line 16 of file NormalizedMultiplicityTypeColorScheme.java.
Referenced by apply().

The documentation for this class was generated from the following file:

Generated on Tue May 21 06:03:13 2013 for Mauve by

1.3.6