org::gel::mauve::color::MultiplicityTypeColorScheme Class Reference

Color matches by their multiplicity and the sequences they match in. More...

Inheritance diagram for org::gel::mauve::color::MultiplicityTypeColorScheme:

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List of all members.

Public Member Functions

void apply (BaseViewerModel model)
String toString ()

Detailed Description

Color matches by their multiplicity and the sequences they match in.

Will not work with more than 62 sequences.

Definition at line 14 of file MultiplicityTypeColorScheme.java.


Member Function Documentation

void org::gel::mauve::color::MultiplicityTypeColorScheme::apply BaseViewerModel  model  )  [inline]
 

Parameters:
model Apply the color scheme to the elements of the model. At a minimum, the matches of the model must be assigned colors.

Implements org::gel::mauve::ColorScheme.

Definition at line 16 of file MultiplicityTypeColorScheme.java.

References org::gel::mauve::Match::color, org::gel::mauve::BaseViewerModel::getGenomeByViewingIndex(), org::gel::mauve::BaseViewerModel::getMatch(), org::gel::mauve::BaseViewerModel::getMatchCount(), org::gel::mauve::BaseViewerModel::getSequenceCount(), and org::gel::mauve::Match::getStart().

String org::gel::mauve::color::MultiplicityTypeColorScheme::toString  )  [inline]
 

Definition at line 42 of file MultiplicityTypeColorScheme.java.


The documentation for this class was generated from the following file:
Generated on Mon Aug 19 06:03:52 2013 for Mauve by doxygen 1.3.6