org::gel::mauve::color::MultiplicityTypeColorScheme Class Reference

Color matches by their multiplicity and the sequences they match in. More...

Inheritance diagram for org::gel::mauve::color::MultiplicityTypeColorScheme:

[legend]Collaboration diagram for org::gel::mauve::color::MultiplicityTypeColorScheme:

[legend]List of all members.

Public Member Functions
void	apply (BaseViewerModel model)
String	toString ()

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Detailed Description

Color matches by their multiplicity and the sequences they match in.

Will not work with more than 62 sequences.

Definition at line 14 of file MultiplicityTypeColorScheme.java.

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Member Function Documentation

void org::gel::mauve::color::MultiplicityTypeColorScheme::apply (  BaseViewerModel  model  )  [inline]

Parameters: model  Apply the color scheme to the elements of the model. At a minimum, the matches of the model must be assigned colors. Implements org::gel::mauve::ColorScheme. Definition at line 16 of file MultiplicityTypeColorScheme.java. References org::gel::mauve::Match::color, org::gel::mauve::BaseViewerModel::getGenomeByViewingIndex(), org::gel::mauve::BaseViewerModel::getMatch(), org::gel::mauve::BaseViewerModel::getMatchCount(), org::gel::mauve::BaseViewerModel::getSequenceCount(), and org::gel::mauve::Match::getStart().

String org::gel::mauve::color::MultiplicityTypeColorScheme::toString (   )  [inline]

Definition at line 42 of file MultiplicityTypeColorScheme.java.

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/color/MultiplicityTypeColorScheme.java

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