org::gel::mauve::color::MultiplicityColorScheme Class Reference

Colors the matches based on their multiplicity. More...

Inheritance diagram for org::gel::mauve::color::MultiplicityColorScheme:

[legend]Collaboration diagram for org::gel::mauve::color::MultiplicityColorScheme:

[legend]List of all members.

Public Member Functions
void	apply (BaseViewerModel model)
String	toString ()
Private Member Functions
Vector	getMatchColorTable (BaseViewerModel model)
void	initColorTable (BaseViewerModel model)
Private Attributes
Vector	_matchColorTable

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Detailed Description

Colors the matches based on their multiplicity.

Definition at line 14 of file MultiplicityColorScheme.java.

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Member Function Documentation

void org::gel::mauve::color::MultiplicityColorScheme::apply (  BaseViewerModel  model  )  [inline]

Parameters: model  Apply the color scheme to the elements of the model. At a minimum, the matches of the model must be assigned colors. Implements org::gel::mauve::ColorScheme. Definition at line 17 of file MultiplicityColorScheme.java. References org::gel::mauve::Match::color, org::gel::mauve::BaseViewerModel::getGenomeByViewingIndex(), org::gel::mauve::BaseViewerModel::getMatch(), getMatchColorTable(), org::gel::mauve::BaseViewerModel::getMatchCount(), org::gel::mauve::BaseViewerModel::getSequenceCount(), and org::gel::mauve::Match::getStart().

Vector org::gel::mauve::color::MultiplicityColorScheme::getMatchColorTable (  BaseViewerModel  model  )  [inline, private]

Definition at line 38 of file MultiplicityColorScheme.java. References _matchColorTable, and initColorTable(). Referenced by apply().

void org::gel::mauve::color::MultiplicityColorScheme::initColorTable (  BaseViewerModel  model  )  [inline, private]

Definition at line 46 of file MultiplicityColorScheme.java. References _matchColorTable, and org::gel::mauve::BaseViewerModel::getSequenceCount(). Referenced by getMatchColorTable().

String org::gel::mauve::color::MultiplicityColorScheme::toString (   )  [inline]

Definition at line 74 of file MultiplicityColorScheme.java.

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Member Data Documentation

Vector org::gel::mauve::color::MultiplicityColorScheme::_matchColorTable [private]

Definition at line 15 of file MultiplicityColorScheme.java. Referenced by getMatchColorTable(), and initColorTable().

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/color/MultiplicityColorScheme.java

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