org::gel::mauve::chado::ChadoFeatureLoader Class Reference

List of all members.

Public Member Functions
	ChadoFeatureLoader (Connection chado_conn)
void	getFeatures (String genus, String species) throws SQLException
Private Attributes
Connection	conn
Static Private Attributes
String	QUERY

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Constructor & Destructor Documentation

org::gel::mauve::chado::ChadoFeatureLoader::ChadoFeatureLoader (  Connection  chado_conn  )  [inline]

Definition at line 13 of file ChadoFeatureLoader.java.

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Member Function Documentation

void org::gel::mauve::chado::ChadoFeatureLoader::getFeatures (  String  genus, String  species )  throws SQLException [inline]

Definition at line 17 of file ChadoFeatureLoader.java.

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Member Data Documentation

Connection org::gel::mauve::chado::ChadoFeatureLoader::conn [private]

Definition at line 11 of file ChadoFeatureLoader.java.

String org::gel::mauve::chado::ChadoFeatureLoader::QUERY [static, private]

Initial value: "SELECT featureprop.feature_id, cvterm.name, featureprop.value, featureloc.fmin, featureloc.fmax, featureloc.strand, feature.name, db.name, dbxref.accession, feature.dbxref_id, feature_dbxref.dbxref_id, dbxref.dbxref_id "+ "FROM featureprop, cvterm, featureloc, feature, feature_dbxref, dbxref, db "+ "WHERE organism_id = ? " + "(featureprop.type_id = cvterm.cvterm_id) AND " + "(featureprop.feature_id = featureloc.feature_id) AND "+ "(featureprop.feature_id = feature.feature_id) AND " + "(featureprop.feature_id = feature_dbxref.feature_id) AND "+ "(feature_dbxref.dbxref_id = dbxref.dbxref_id) AND "+ "(dbxref.db_id = db.db_id) "+ "LIMIT 100 OFFSET 0" Definition at line 40 of file ChadoFeatureLoader.java.

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/chado/ChadoFeatureLoader.java

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