org::gel::mauve::backbone::BackboneListBuilder Class Reference

List of all members.

Static Public Member Functions

BackboneList build (XmfaViewerModel model, XMFAAlignment xmfa) throws IOException
File getFileByKey (XmfaViewerModel model, XMFAAlignment xmfa, String key)

Member Function Documentation

BackboneList org::gel::mauve::backbone::BackboneListBuilder::build XmfaViewerModel  model,
XMFAAlignment  xmfa
throws IOException [inline, static]
 

Definition at line 34 of file BackboneListBuilder.java.

References getFileByKey(), org::gel::mauve::backbone::Backbone::getSeqs(), org::gel::mauve::backbone::Backbone::length, org::gel::mauve::backbone::BackboneList::setBackbone(), org::gel::mauve::backbone::Backbone::setLcbIndex(), org::gel::mauve::backbone::Backbone::setLeftColumn(), org::gel::mauve::backbone::Backbone::setLeftEnd(), org::gel::mauve::backbone::Backbone::setLength(), org::gel::mauve::backbone::Backbone::setRightEnd(), org::gel::mauve::backbone::BackboneList::setSeqBackbone(), org::gel::mauve::backbone::Backbone::setSeqs(), and org::gel::mauve::backbone::BackboneList::setXmfa().

File org::gel::mauve::backbone::BackboneListBuilder::getFileByKey XmfaViewerModel  model,
XMFAAlignment  xmfa,
String  key
[inline, static]
 

Definition at line 17 of file BackboneListBuilder.java.

References org::gel::mauve::XMFAAlignment::metadata.

Referenced by build().


The documentation for this class was generated from the following file:
Generated on Mon Aug 19 06:03:51 2013 for Mauve by doxygen 1.3.6