org::gel::mauve::backbone::BackboneListBuilder Class Reference

List of all members.

Static Public Member Functions
BackboneList	build (XmfaViewerModel model, XMFAAlignment xmfa) throws IOException
File	getFileByKey (XmfaViewerModel model, XMFAAlignment xmfa, String key)

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Member Function Documentation

BackboneList org::gel::mauve::backbone::BackboneListBuilder::build (  XmfaViewerModel  model, XMFAAlignment  xmfa )  throws IOException [inline, static]

Definition at line 34 of file BackboneListBuilder.java. References getFileByKey(), org::gel::mauve::backbone::Backbone::getSeqs(), org::gel::mauve::backbone::Backbone::length, org::gel::mauve::backbone::BackboneList::setBackbone(), org::gel::mauve::backbone::Backbone::setLcbIndex(), org::gel::mauve::backbone::Backbone::setLeftColumn(), org::gel::mauve::backbone::Backbone::setLeftEnd(), org::gel::mauve::backbone::Backbone::setLength(), org::gel::mauve::backbone::Backbone::setRightEnd(), org::gel::mauve::backbone::BackboneList::setSeqBackbone(), org::gel::mauve::backbone::Backbone::setSeqs(), and org::gel::mauve::backbone::BackboneList::setXmfa().

File org::gel::mauve::backbone::BackboneListBuilder::getFileByKey (  XmfaViewerModel  model, XMFAAlignment  xmfa, String  key )  [inline, static]

Definition at line 17 of file BackboneListBuilder.java. References org::gel::mauve::XMFAAlignment::metadata. Referenced by build().

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/backbone/BackboneListBuilder.java

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