org::gel::mauve::MatchStartComparator Class Reference

Compare the start coordinates of ungapped local alignments in a particular sequence Note: this comparator imposes orderings that are inconsistent with the equals operator. More...

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Public Member Functions

int compare (Object o1, Object o2)
boolean equals (Object c)
 MatchStartComparator (MatchStartComparator m)
 MatchStartComparator (Genome g)

Private Attributes

Genome g

Detailed Description

Compare the start coordinates of ungapped local alignments in a particular sequence Note: this comparator imposes orderings that are inconsistent with the equals operator.

Definition at line 13 of file MatchStartComparator.java.


Constructor & Destructor Documentation

org::gel::mauve::MatchStartComparator::MatchStartComparator Genome  g  )  [inline]
 

Definition at line 17 of file MatchStartComparator.java.

References org::gel::mauve::Genome::getSourceIndex().

org::gel::mauve::MatchStartComparator::MatchStartComparator MatchStartComparator  m  )  [inline]
 

Definition at line 22 of file MatchStartComparator.java.

References g, and org::gel::mauve::Genome::getSourceIndex().


Member Function Documentation

int org::gel::mauve::MatchStartComparator::compare Object  o1,
Object  o2
[inline]
 

Definition at line 27 of file MatchStartComparator.java.

boolean org::gel::mauve::MatchStartComparator::equals Object  c  )  [inline]
 

Definition at line 31 of file MatchStartComparator.java.


Member Data Documentation

Genome org::gel::mauve::MatchStartComparator::g [private]
 

Definition at line 15 of file MatchStartComparator.java.

Referenced by MatchStartComparator().


The documentation for this class was generated from the following file:
Generated on Mon Aug 19 06:03:47 2013 for Mauve by doxygen 1.3.6