org::gel::mauve::MatchStartComparator Class Reference

Compare the start coordinates of ungapped local alignments in a particular sequence Note: this comparator imposes orderings that are inconsistent with the equals operator. More...

Collaboration diagram for org::gel::mauve::MatchStartComparator:

[legend]List of all members.

Public Member Functions
int	compare (Object o1, Object o2)
boolean	equals (Object c)
	MatchStartComparator (MatchStartComparator m)
	MatchStartComparator (Genome g)
Private Attributes
Genome	g

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Detailed Description

Compare the start coordinates of ungapped local alignments in a particular sequence Note: this comparator imposes orderings that are inconsistent with the equals operator.

Definition at line 13 of file MatchStartComparator.java.

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Constructor & Destructor Documentation

org::gel::mauve::MatchStartComparator::MatchStartComparator (  Genome  g  )  [inline]

Definition at line 17 of file MatchStartComparator.java. References org::gel::mauve::Genome::getSourceIndex().

org::gel::mauve::MatchStartComparator::MatchStartComparator (  MatchStartComparator  m  )  [inline]

Definition at line 22 of file MatchStartComparator.java. References g, and org::gel::mauve::Genome::getSourceIndex().

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Member Function Documentation

int org::gel::mauve::MatchStartComparator::compare (  Object  o1, Object  o2 )  [inline]

Definition at line 27 of file MatchStartComparator.java.

boolean org::gel::mauve::MatchStartComparator::equals (  Object  c  )  [inline]

Definition at line 31 of file MatchStartComparator.java.

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Member Data Documentation

Genome org::gel::mauve::MatchStartComparator::g [private]

Definition at line 15 of file MatchStartComparator.java. Referenced by MatchStartComparator().

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The documentation for this class was generated from the following file:

• src/org/gel/mauve/MatchStartComparator.java

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