libMems Class Hierarchy

Go to the graphical class hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

• mems::_aFILE
• mems::_aIORec
• mems::AbsolutComparator< T >
• mems::AbstractGappedAlignment< AbstractMatchImpl >
• mems::AbstractMatch
  • mems::DenseAbstractMatch< MAX_SEQS >
  • mems::HybridAbstractMatch< FIXED_SEQ_COUNT, int64Alloc, uintAlloc >
  • mems::HybridAbstractMatch<>
    • mems::UngappedLocalAlignment< HybridAbstractMatch<> >
  • mems::MatchProjectionAdapter
  • mems::PairwiseMatchAdapter
  • mems::SparseAbstractMatch< gnSeqIAlloc, uintAlloc >
  • mems::SparseAbstractMatch<>
    • mems::AbstractGappedAlignment< SparseAbstractMatch<> >
      • mems::GappedAlignment
• mems::AbstractMatchSingleStartComparator< MatchType >
• mems::AbstractMatchStartComparator< MatchType >
• mems::Aligner
  • mems::ProgressiveAligner
• mems::AlnProgressTracker
• mems::bb_entry_s
• mems::bin_s
• mems::bmer
• mems::buffer_list_s
• mems::buffer_s
• mems::CgaBsComp< CompType >
• mems::CompactGappedAlignment< BaseType >
• mems::device_s
• mems::EvenFasterSumOfPairsBreakpointScorer
• mems::GappedAligner
  • mems::ClustalInterface
  • mems::MuscleInterface
• mems::GenericInterval< GappedBaseImpl >
• mems::GenericIntervalList< MatchType >
• mems::GenericMatchList< MatchPtrType >
  • mems::RepeatMatchList
• mems::GenericMatchSeqManipulator< MatchType >
• mems::gnAlignedSequences
• genome::gnRAWSequence
• mems::GreedyRemovalScorer
• mems::HssCols
• mems::idmer
• mems::iodevice_s
• mems::Island
• mems::IvTrackerComp
• mems::LabeledMem
• mems::LabeledMemComparator
• mems::LabelSort< PairType >
• mems::LCB
• mems::LCBIDComparator
• mems::LCBLeftComparator
• mems::LCBLeftEndComp
• mems::LcbTrackingMatch< MatchType >
• mems::MatchFinder
  • mems::MemHash
    • mems::MaskedMemHash
    • mems::PairwiseMatchFinder
    • mems::ParallelMemHash
    • mems::RepeatHash
• mems::MatchLeftEndComparator
• mems::MatchStartComparator< MatchType >
• Matrix< T >
  • NumericMatrix< T >
• Matrix< T >::BadSize
• Matrix< T >::BoundsViolation
• mems::MerCompare
• mems::MheCompare
• mems::MoveScoreHeapComparator
• mems::PairwiseScoringScheme
• PhyloTree< T >
• mems::PlacementMatch
• mems::PlacementMatchComparator
• mems::record_s
• mems::SearchCacheComparator
• mems::SeedOccurrenceList
• mems::seqbuf_s
• mems::SimpleBreakpointScorer
• mems::SingleStartComparator< MatchType >
• mems::SlotAllocator< T >
• mems::sml_s
• mems::SMLHeader
• mems::SMLHeader_s
• mems::sort_buf_s
• mems::SortedMerList
  • mems::FileSML
    • mems::DNAFileSML
  • mems::MemorySML
    • mems::DNAMemorySML
• mems::SSC< MatchType >
• mems::SuperInterval
• mems::SuperIntervalManipulator
• mems::SuperIntervalPtrComp
• mems::TrackingLCB< MatchType >
• TreeNode
  • mems::AlignmentTreeNode
• mems::UngappedLocalAlignment< AbstractMatchImpl >
  • mems::MatchHashEntry
    • mems::RepeatMatch
• mems::working_set_s

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