libMems File List

Here is a list of all files with brief descriptions:

libMems/AbstractGappedAlignment.h [code]
libMems/AbstractMatch.h [code]
libMems/Aligner.cpp [code]
libMems/Aligner.h [code]
libMems/Backbone.cpp [code]
libMems/Backbone.h [code]
libMems/ClustalInterface.cpp [code]
libMems/ClustalInterface.h [code]
libMems/CompactGappedAlignment.h [code]
libMems/configuration.h [code]
libMems/DenseAbstractMatch.h [code]
libMems/DistanceMatrix.h [code]
libMems/DNAFileSML.cpp [code]
libMems/DNAFileSML.h [code]
libMems/DNAMemorySML.cpp [code]
libMems/DNAMemorySML.h [code]
libMems/Files.h [code]
libMems/FileSML.cpp [code]
libMems/FileSML.h [code]
libMems/GappedAligner.h [code]
libMems/GappedAlignment.cpp [code]
libMems/GappedAlignment.h [code]
libMems/gnAlignedSequences.cpp [code]
libMems/gnAlignedSequences.h [code]
libMems/gnRAWSequence.h [code]
libMems/GreedyBreakpointElimination.cpp [code]
libMems/GreedyBreakpointElimination.h [code]
libMems/HybridAbstractMatch.h [code]
libMems/Interval.cpp [code]
libMems/Interval.h [code]
libMems/IntervalList.cpp [code]
libMems/IntervalList.h [code]
libMems/Islands.cpp [code]
libMems/Islands.h [code]
libMems/LCB.h [code]
libMems/MaskedMemHash.cpp [code]
libMems/MaskedMemHash.h [code]
libMems/Match.h [code]
libMems/MatchFinder.cpp [code]
libMems/MatchFinder.h [code]
libMems/MatchHashEntry.cpp [code]
libMems/MatchHashEntry.h [code]
libMems/MatchList.cpp [code]
libMems/MatchList.h [code]
libMems/MatchProjectionAdapter.h [code]
libMems/Matrix.h [code]
libMems/MemHash.cpp [code]
libMems/MemHash.h [code]
libMems/Memory.h [code]
libMems/MemorySML.cpp [code]
libMems/MemorySML.h [code]
libMems/MuscleInterface.cpp [code]
libMems/MuscleInterface.h [code]
libMems/NumericMatrix.h [code]
libMems/PairwiseMatchAdapter.h [code]
libMems/PairwiseMatchFinder.cpp [code]
libMems/PairwiseMatchFinder.h [code]
libMems/ParallelMemHash.cpp [code]
libMems/ParallelMemHash.h [code]
libMems/PhyloTree.cpp [code]
libMems/PhyloTree.h [code]
libMems/ProgressiveAligner.cpp [code]
libMems/ProgressiveAligner.h [code]
libMems/RepeatHash.cpp [code]
libMems/RepeatHash.h [code]
libMems/RepeatMatch.cpp [code]
libMems/RepeatMatch.h [code]
libMems/RepeatMatchList.cpp [code]
libMems/RepeatMatchList.h [code]
libMems/Scoring.h [code]
libMems/SeedMasks.h [code]
libMems/SeedOccurrenceList.h [code]
libMems/SlotAllocator.cpp [code]
libMems/SlotAllocator.h [code]
libMems/SortedMerList.cpp [code]
libMems/SortedMerList.h [code]
libMems/SparseAbstractMatch.h [code]
libMems/SubstitutionMatrix.h [code]
libMems/SuperInterval.cpp [code]
libMems/SuperInterval.h [code]
libMems/TreeUtilities.h [code]
libMems/twister.c [code]
libMems/twister.h [code]
libMems/UngappedLocalAlignment.h [code]

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