mems::LcbTrackingMatch< MatchType > Class Template Reference

A wrapper that maps a match among extant sequences to a match among ancestral and extant seqs. More...

#include <GreedyBreakpointElimination.h>

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Public Attributes

size_t match_id
MatchType node_match
MatchType original_match

Detailed Description

template<class MatchType>
class mems::LcbTrackingMatch< MatchType >

A wrapper that maps a match among extant sequences to a match among ancestral and extant seqs.

Definition at line 26 of file GreedyBreakpointElimination.h.


Member Data Documentation

template<class MatchType>
size_t mems::LcbTrackingMatch< MatchType >::match_id
 

Definition at line 31 of file GreedyBreakpointElimination.h.

Referenced by mems::ProgressiveAligner::constructLcbTrackingMatches(), mems::getPairwiseLCBs(), and mems::EvenFasterSumOfPairsBreakpointScorer::validate().

template<class MatchType>
MatchType mems::LcbTrackingMatch< MatchType >::node_match
 

Definition at line 30 of file GreedyBreakpointElimination.h.

Referenced by mems::ProgressiveAligner::constructLcbTrackingMatches(), mems::ProgressiveAligner::pairwiseScoreTrackingMatches(), and mems::EvenFasterSumOfPairsBreakpointScorer::validate().

template<class MatchType>
MatchType mems::LcbTrackingMatch< MatchType >::original_match
 

Definition at line 29 of file GreedyBreakpointElimination.h.

Referenced by mems::ProgressiveAligner::constructLcbTrackingMatches().


The documentation for this class was generated from the following file:
Generated on Fri Mar 14 06:01:41 2008 for libMems by doxygen 1.3.6