mems::LcbTrackingMatch< MatchType > Class Template Reference

A wrapper that maps a match among extant sequences to a match among ancestral and extant seqs. More...

#include <GreedyBreakpointElimination.h>

Collaboration diagram for mems::LcbTrackingMatch< MatchType >:

[legend]List of all members.

Public Attributes
size_t	match_id
MatchType	node_match
MatchType	original_match

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Detailed Description

template<class MatchType>
class mems::LcbTrackingMatch< MatchType >

A wrapper that maps a match among extant sequences to a match among ancestral and extant seqs.

Definition at line 26 of file GreedyBreakpointElimination.h.

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Member Data Documentation

template<class MatchType> size_t mems::LcbTrackingMatch< MatchType >::match_id

Definition at line 31 of file GreedyBreakpointElimination.h. Referenced by mems::ProgressiveAligner::constructLcbTrackingMatches(), mems::getPairwiseLCBs(), and mems::EvenFasterSumOfPairsBreakpointScorer::validate().

template<class MatchType> MatchType mems::LcbTrackingMatch< MatchType >::node_match

Definition at line 30 of file GreedyBreakpointElimination.h. Referenced by mems::ProgressiveAligner::constructLcbTrackingMatches(), mems::ProgressiveAligner::pairwiseScoreTrackingMatches(), and mems::EvenFasterSumOfPairsBreakpointScorer::validate().

template<class MatchType> MatchType mems::LcbTrackingMatch< MatchType >::original_match

Definition at line 29 of file GreedyBreakpointElimination.h. Referenced by mems::ProgressiveAligner::constructLcbTrackingMatches().

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The documentation for this class was generated from the following file:

• libMems/GreedyBreakpointElimination.h

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